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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65471326_65472097_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
65471326 - 65472097
Intron Length:
772

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAAAAGC
5'SS Class:
major
3'SS Sequence:
TCCTTCATACCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATGTCCTTCATA
Flanking Amino Acid:
YLIRCLIENGALPDGIGANS
Intron Amino Acid Position:
446

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
0.9
68.3
36.8
Major BPS
100
1.24
0.5
100
0
Major PPT
73.7
0.53
0.9
67
38
Minor 5ss
27.7
-2.6
2.9
34.6
41.3
Minor BPS
65.4
0.48
1.7
73.39
39

Associated Gene:

Gene:
TRANK1
Ensembl Gene ID:
ENSAPLG00000010356
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010785
65444577 - 65493084
48508
ENSAPLT00000047877
65444577 - 65493084
48508
ENSAPLT00000045226
65444577 - 65491911
47335
ENSAPLT00000032043
65444577 - 65493084
48508
ENSAPLT00000021861
65444577 - 65493084
48508