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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65472275_65473770_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
65472275 - 65473770
Intron Length:
1496

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTCATTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTTTTTGTCATT
Flanking Amino Acid:
AAVYIYFDKKDVIGLNILNY
Intron Amino Acid Position:
505

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
82.5
37
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
82.4
0.73
0.9
73.9
40.7
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
48.9
-0
2.3
78.3
39.3

Associated Gene:

Gene:
TRANK1
Ensembl Gene ID:
ENSAPLG00000010356
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045226
65444577 - 65491911
47335
ENSAPLT00000032043
65444577 - 65493084
48508
ENSAPLT00000021861
65444577 - 65493084
48508
ENSAPLT00000010785
65444577 - 65493084
48508
ENSAPLT00000047877
65444577 - 65493084
48508