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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65477915_65480760_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
65477915 - 65480760
Intron Length:
2846

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTAACATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
GTTCTTTTAACA
Flanking Amino Acid:
LLYNFFTDSEAGKEWKIISS
Intron Amino Acid Position:
1574

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
81.6
31.4
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
74.7
0.56
0.9
71.5
38.9
Minor 5ss
43.6
-0.7
2.6
59.8
44.7
Minor BPS
72.9
0.71
1.1
77.15
33.2

Associated Gene:

Gene:
TRANK1
Ensembl Gene ID:
ENSAPLG00000010356
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010785
65444577 - 65493084
48508
ENSAPLT00000047877
65444577 - 65493084
48508
ENSAPLT00000045226
65444577 - 65491911
47335
ENSAPLT00000021861
65444577 - 65493084
48508