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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65482361_65483945_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
65482361 - 65483945
Intron Length:
1585

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAACA
5'SS Class:
strong_major
3'SS Sequence:
TGATCTCACCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAC
U12 Branch Point Sequence:
ATGATCTCACCC
Flanking Amino Acid:
DYYAKHQFWEVAAKCYQKGG
Intron Amino Acid Position:
1704

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
74.4
36
Major BPS
76.2
0.65
0.9
77.4
26.5
Major PPT
67.2
0.39
1
58.9
41.9
Minor 5ss
32.4
-2
3.1
40.9
45.1
Minor BPS
47
-0.2
1.8
57.28
41.4

Associated Gene:

Gene:
TRANK1
Ensembl Gene ID:
ENSAPLG00000010356
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045226
65444577 - 65491911
47335
ENSAPLT00000032043
65444577 - 65493084
48508
ENSAPLT00000021861
65444577 - 65493084
48508
ENSAPLT00000010785
65444577 - 65493084
48508
ENSAPLT00000047877
65444577 - 65493084
48508