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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65484547_65485499_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
65484547 - 65485499
Intron Length:
953

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTAAAT
5'SS Class:
major
3'SS Sequence:
TTCTGCATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAC
U12 Branch Point Sequence:
GTTTCCTTATTG
Flanking Amino Acid:
CAELCKKLGKMKEAAVYYQK
Intron Amino Acid Position:
1783

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1
75.3
33.9
Major BPS
78.7
0.71
0.9
69.3
37.7
Major PPT
80.1
0.68
0.9
73.8
35.4
Minor 5ss
41.3
-1
2.9
57.7
46.5
Minor BPS
68.8
0.45
1.7
72.14
41

Associated Gene:

Gene:
TRANK1
Ensembl Gene ID:
ENSAPLG00000010356
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010785
65444577 - 65493084
48508
ENSAPLT00000047877
65444577 - 65493084
48508
ENSAPLT00000045226
65444577 - 65491911
47335
ENSAPLT00000032043
65444577 - 65493084
48508
ENSAPLT00000021861
65444577 - 65493084
48508