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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65485646_65487427_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
65485646 - 65487427
Intron Length:
1782

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCTTTC
5'SS Class:
major
3'SS Sequence:
TGTTTTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
TATGTTTTATTT
Flanking Amino Acid:
LYEEAAKAVERYEEILNTRG
Intron Amino Acid Position:
1831

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1.2
73.4
38.9
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
87.7
0.85
0.8
85.7
33.4
Minor 5ss
49.2
-0
2.8
70.3
40.3
Minor BPS
54.8
0.23
1.6
71.82
40.2

Associated Gene:

Gene:
TRANK1
Ensembl Gene ID:
ENSAPLG00000010356
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032043
65444577 - 65493084
48508
ENSAPLT00000021861
65444577 - 65493084
48508
ENSAPLT00000010785
65444577 - 65493084
48508
ENSAPLT00000047877
65444577 - 65493084
48508
ENSAPLT00000045226
65444577 - 65491911
47335