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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65491774_65492971_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
65491774 - 65492971
Intron Length:
1198

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTGTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTGGCATTAATT
Flanking Amino Acid:
KKMDLHRIKEDFVHDRDLED
Intron Amino Acid Position:
2889

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
89.6
24.2
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
90.7
0.92
0.8
87.5
30
Minor 5ss
57.8
0.27
2.3
75.5
40.6
Minor BPS
65.3
0.56
1.7
80.85
41.3

Associated Gene:

Gene:
TRANK1
Ensembl Gene ID:
ENSAPLG00000010356
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047877
65444577 - 65493084
48508
ENSAPLT00000032043
65444577 - 65493084
48508
ENSAPLT00000021861
65444577 - 65493084
48508
ENSAPLT00000010785
65444577 - 65493084
48508