Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65541748_65545477_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

65541748 - 65545477

Intron Length:

3730

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGT|GTGAGTAAT

5'SS Class:

major

3'SS Sequence:

TTCTTTGCTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GAATAAT

U12 Branch Point Sequence:

CAACGAATAATG

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.9

0.54

1.1

76.1

34.8

Major BPS

62.3

0.31

1.3

64.3

39.7

Major PPT

81.9

0.72

0.8

81.2

30.9

Minor 5ss

33.9

-1.8

2.9

43.1

43.9

Minor BPS

37.5

-1

37.21

38.4

Associated Gene:

Gene:

DCLK3

Ensembl Gene ID:

ENSAPLG00000010406

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028063

65532492 - 65557715

25224