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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65547352_65554827_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
65547352 - 65554827
Intron Length:
7476

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TCATCGAATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATCGAAT
Flanking Amino Acid:
HRDLKPENLLVQHNADKSTT
Intron Amino Acid Position:
649

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.93
0.8
83.5
35
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
61.7
0.26
1
55.8
38.9
Minor 5ss
39.5
-1.2
2.8
48.4
41.7
Minor BPS
51.1
0.11
2
76.64
39.2

Associated Gene:

Gene:
DCLK3
Ensembl Gene ID:
ENSAPLG00000010406
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030145
65532165 - 65557715
25551
ENSAPLT00000028710
65543210 - 65557715
14506
ENSAPLT00000028063
65532492 - 65557715
25224
ENSAPLT00000010829
65528533 - 65557715
29183