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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65554961_65555928_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
65554961 - 65555928
Intron Length:
968

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAA
U12 Branch Point Sequence:
TGGTTTGTATTT
Flanking Amino Acid:
YVAPEILAEKGYGLEVDMWA
Intron Amino Acid Position:
693

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
77.5
32.8
Major BPS
67.4
0.43
1.1
67.9
36.3
Major PPT
85.2
0.79
0.6
85.4
21.9
Minor 5ss
30.4
-2.2
3.2
31.7
42.6
Minor BPS
45
-0.3
2.1
63.15
42.3

Associated Gene:

Gene:
DCLK3
Ensembl Gene ID:
ENSAPLG00000010406
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028710
65543210 - 65557715
14506
ENSAPLT00000028063
65532492 - 65557715
25224
ENSAPLT00000010829
65528533 - 65557715
29183
ENSAPLT00000030145
65532165 - 65557715
25551