About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65556097_65557518_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
65556097 - 65557518
Intron Length:
1422

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCATAATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCTTTCATAATA
Flanking Amino Acid:
LSPYWDNISAAAKDLIARLL
Intron Amino Acid Position:
749

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96
1.08
0.7
85.2
32.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
74.3
0.55
0.9
70.9
33.3
Minor 5ss
36.3
-1.6
3.3
48.7
47.5
Minor BPS
66.5
0.51
1.6
75.53
36.2

Associated Gene:

Gene:
DCLK3
Ensembl Gene ID:
ENSAPLG00000010406
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028710
65543210 - 65557715
14506
ENSAPLT00000028063
65532492 - 65557715
25224
ENSAPLT00000010829
65528533 - 65557715
29183
ENSAPLT00000030145
65532165 - 65557715
25551