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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65582270_65584092_F

Intron Information:

Intron Rank:
142567
Intron Class:
major
Intron Phase:
Intron Coordinates:
65582270 - 65584092
Intron Length:
1823

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGCGTT
5'SS Class:
major
3'SS Sequence:
TATCCCTTACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
TATCCCTTACTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1.1
68.8
42.2
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
70
0.45
0.9
63.5
37.7
Minor 5ss
41
-1
3.7
60.4
46.7
Minor BPS
65.9
0.5
1.6
74.14
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026830
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046456
65582119 - 65628865
46747
ENSAPLT00000041650
65582119 - 65628800
46682
ENSAPLT00000040978
65560562 - 65596894
36333