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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65589393_65596093_F

Intron Information:

Intron Rank:
142569
Intron Class:
major
Intron Phase:
Intron Coordinates:
65589393 - 65596093
Intron Length:
6701

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
CCTCATCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TGATCCTAAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.9
81.8
38.5
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
79.1
0.66
0.8
72.5
31.8
Minor 5ss
41.1
-1
2.9
57.9
46.4
Minor BPS
66.3
0.51
1.7
73.02
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026830
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040978
65560562 - 65596894
36333