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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65622524_65628748_F

Intron Information:

Intron Rank:
142572
Intron Class:
major
Intron Phase:
Intron Coordinates:
65622524 - 65628748
Intron Length:
6225

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTGTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGTAAT
U12 Branch Point Sequence:
TTGTGTGTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
78.3
32.5
Major BPS
66.7
0.41
1.4
69.7
44.2
Major PPT
78.2
0.64
0.9
76.9
37.3
Minor 5ss
35.1
-1.7
2.8
43.9
43.9
Minor BPS
49.2
0.02
2.3
74.76
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026830
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041650
65582119 - 65628800
46682