About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65643623_65655423_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
65643623 - 65655423
Intron Length:
11801

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTGCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTACATTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
CCTTCTTTACAT
Flanking Amino Acid:
QGQITLKENQICVTSEKEHD
Intron Amino Acid Position:
370

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1.1
75
35.3
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
80.7
0.69
0.9
78.6
34
Minor 5ss
38.5
-1.3
3.1
50.7
45.7
Minor BPS
57.3
0.31
1.8
72.3
45

Associated Gene:

Gene:
STAC
Ensembl Gene ID:
ENSAPLG00000010417
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010855
65643269 - 65723446
80178