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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65650512_65655423_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
65650512 - 65655423
Intron Length:
4912

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTGCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTCAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
TCTTTCTCAACA
Flanking Amino Acid:
QGQITLKENQGHSFRDTEWH
Intron Amino Acid Position:
370

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1.1
75
35.3
Major BPS
84
0.85
0.9
75
39.9
Major PPT
81.1
0.7
0.8
77.6
29.8
Minor 5ss
38.5
-1.3
3.1
50.7
45.7
Minor BPS
71.9
0.68
1.5
79.1
37.4

Associated Gene:

Gene:
STAC
Ensembl Gene ID:
ENSAPLG00000010417
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044083
65649894 - 65723446
73553