Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65670713_65672647_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

65670713 - 65672647

Intron Length:

1935

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGTGAG

5'SS Class:

strong_major

3'SS Sequence:

TCTCTCCCTCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ACTTCAT

U12 Branch Point Sequence:

ATTCACTTCATA

Flanking Amino Acid:

IGQQRCMGKLPKGFRRYYSS

Intron Amino Acid Position:

165

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.87

0.9

74.1

36.5

Major BPS

78.6

0.71

79.6

32.9

Major PPT

82.4

0.73

0.7

73.7

31.4

Minor 5ss

32.2

-2

3.1

41.8

Minor BPS

0.06

1.9

68.37

37.9

Associated Gene:

Gene:

STAC

Ensembl Gene ID:

ENSAPLG00000010417

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044083

65649894 - 65723446

73553

ENSAPLT00000010855

65643269 - 65723446

80178