About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65801555_65803069_R

Intron Information:

Intron Rank:
140753
Intron Class:
major
Intron Phase:
Intron Coordinates:
65801555 - 65803069
Intron Length:
1515

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGCTCATA
5'SS Class:
major
3'SS Sequence:
GTTTTTCCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCCT
U12 Branch Point Sequence:
TTTTTCCTACAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68
0.42
1.1
67.1
39.9
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
86.7
0.83
0.7
80.9
31.3
Minor 5ss
36.5
-1.5
3.2
48.8
47
Minor BPS
49
-0.2
2.1
64.91
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023082
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035503
65801493 - 65803702
2210