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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65803140_65877985_R

Intron Information:

Intron Rank:
140755
Intron Class:
major
Intron Phase:
Intron Coordinates:
65803140 - 65877985
Intron Length:
74846

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGTA
5'SS Class:
strong_major
3'SS Sequence:
AATTAATTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
ATTCACTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
77.5
32.8
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
75.8
0.58
1
71.1
43.3
Minor 5ss
29.4
-2.4
3.4
39.4
46.5
Minor BPS
66.7
0.6
1.6
82.99
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023082
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037777
65802731 - 65921956
119226