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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65878103_65921946_R

Intron Information:

Intron Rank:
140756
Intron Class:
major
Intron Phase:
Intron Coordinates:
65878103 - 65921946
Intron Length:
43844

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATGTC
5'SS Class:
major
3'SS Sequence:
ATGTTTCTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
CCGACTTAAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
74.7
33.7
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
78.3
0.64
0.9
70.7
40.5
Minor 5ss
42.7
-0.8
3.2
60.6
44.5
Minor BPS
46.4
-0.2
1.8
56.97
45.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023082
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037777
65802731 - 65921956
119226