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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65954636_65955846_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
65954636 - 65955846
Intron Length:
1211

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTAGA
5'SS Class:
major
3'SS Sequence:
TACATCTGTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTTTTTCTACAT
Flanking Amino Acid:
VQYPAMSSYQVPMTQGSQGL
Intron Amino Acid Position:
773

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.1
71
40.8
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
66.2
0.37
1
58.3
42.7
Minor 5ss
34.1
-1.8
2.9
43.4
43.5
Minor BPS
49.6
0.05
2
77.14
39.5

Associated Gene:

Gene:
ARPP21
Ensembl Gene ID:
ENSAPLG00000004808
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024541
65954378 - 66077058
122681
ENSAPLT00000021947
65954378 - 66062834
108457
ENSAPLT00000019548
65954285 - 66099776
145492
ENSAPLT00000041803
65954378 - 66088738
134361
ENSAPLT00000004992
65954378 - 66088738
134361
ENSAPLT00000034004
65954285 - 66099776
145492