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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65955999_65961909_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
65955999 - 65961909
Intron Length:
5911

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTGAA
U12 Branch Point Sequence:
TGTACTTGAAGG
Flanking Amino Acid:
DGPTQNFWQISYQPVLANQQ
Intron Amino Acid Position:
704

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
0.9
72
34.3
Major BPS
65.8
0.39
1
57.3
39.4
Major PPT
92.8
0.96
0.6
88.6
20.9
Minor 5ss
36.8
-1.5
2.9
43.8
38
Minor BPS
49.2
-0.2
1.9
57.78
43.6

Associated Gene:

Gene:
ARPP21
Ensembl Gene ID:
ENSAPLG00000004808
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019548
65954285 - 66099776
145492