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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65994482_66002376_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
65994482 - 66002376
Intron Length:
7895

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTGTAGTTAGCT
Flanking Amino Acid:
FVQQPPPPAQMSVYYYPSGQ
Intron Amino Acid Position:
680

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
74.1
38.3
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
88.8
0.87
0.6
84
23.9
Minor 5ss
37.3
-1.4
3.1
47.6
48.1
Minor BPS
49.2
0.02
2.4
76.88
45.4

Associated Gene:

Gene:
ARPP21
Ensembl Gene ID:
ENSAPLG00000004808
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024541
65954378 - 66077058
122681
ENSAPLT00000021947
65954378 - 66062834
108457
ENSAPLT00000041803
65954378 - 66088738
134361
ENSAPLT00000019548
65954285 - 66099776
145492
ENSAPLT00000034004
65954285 - 66099776
145492
ENSAPLT00000004992
65954378 - 66088738
134361