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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_66002641_66005068_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
66002641 - 66005068
Intron Length:
2428

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTACTAAAG
5'SS Class:
major
3'SS Sequence:
TTTTGCCCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
ATGTCTACACCA
Flanking Amino Acid:
PVSPTQQFSVRDDMTTQFNQ
Intron Amino Acid Position:
592

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.6
0.32
1.1
57.3
41.4
Major BPS
79.4
0.73
1
80.1
32
Major PPT
84.2
0.77
0.8
78.1
30.7
Minor 5ss
32
-2.1
3.1
36.9
42.3
Minor BPS
45
-0.3
2
58.73
41.1

Associated Gene:

Gene:
ARPP21
Ensembl Gene ID:
ENSAPLG00000004808
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024541
65954378 - 66077058
122681
ENSAPLT00000021947
65954378 - 66062834
108457
ENSAPLT00000019548
65954285 - 66099776
145492
ENSAPLT00000041803
65954378 - 66088738
134361
ENSAPLT00000004992
65954378 - 66088738
134361
ENSAPLT00000034004
65954285 - 66099776
145492