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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_66007568_66011853_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
66007568 - 66011853
Intron Length:
4286

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTCCG
5'SS Class:
major
3'SS Sequence:
TGTTTTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTTCATCACTT
Flanking Amino Acid:
PGSILLNPHTGQPFVNPDGT
Intron Amino Acid Position:
500

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1.3
66.3
45.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
86.5
0.82
0.9
84.6
36
Minor 5ss
30
-2.3
2.6
34
41.3
Minor BPS
49.4
0.03
2.1
74.39
42.3

Associated Gene:

Gene:
ARPP21
Ensembl Gene ID:
ENSAPLG00000004808
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024541
65954378 - 66077058
122681
ENSAPLT00000021947
65954378 - 66062834
108457
ENSAPLT00000019548
65954285 - 66099776
145492
ENSAPLT00000041803
65954378 - 66088738
134361
ENSAPLT00000004992
65954378 - 66088738
134361
ENSAPLT00000034004
65954285 - 66099776
145492