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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_66012085_66019163_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
66012085 - 66019163
Intron Length:
7079

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCTAGT
5'SS Class:
major
3'SS Sequence:
GTCTCTCTGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
AACTTCATAACT
Flanking Amino Acid:
NKSTGKLSKTGSESSSSAGS
Intron Amino Acid Position:
423

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.2
72.7
44.5
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
69.6
0.44
1
69.7
36.7
Minor 5ss
41.6
-0.9
3
60.2
44.3
Minor BPS
63
0.49
1.6
76.29
40

Associated Gene:

Gene:
ARPP21
Ensembl Gene ID:
ENSAPLG00000004808
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019548
65954285 - 66099776
145492
ENSAPLT00000041803
65954378 - 66088738
134361
ENSAPLT00000004992
65954378 - 66088738
134361
ENSAPLT00000034004
65954285 - 66099776
145492
ENSAPLT00000024541
65954378 - 66077058
122681
ENSAPLT00000021947
65954378 - 66062834
108457