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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_66024070_66030647_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
66024070 - 66030647
Intron Length:
6578

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CCTTTTTTATTT
Flanking Amino Acid:
RVRERIFAQDSVCSQENLFV
Intron Amino Acid Position:
314

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
79.9
34.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
93.8
0.99
0.6
92.5
25.7
Minor 5ss
34.4
-1.8
2.9
47
41.7
Minor BPS
57.3
0.31
1.6
70.13
42.3

Associated Gene:

Gene:
ARPP21
Ensembl Gene ID:
ENSAPLG00000004808
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034004
65954285 - 66099776
145492
ENSAPLT00000024541
65954378 - 66077058
122681
ENSAPLT00000004992
65954378 - 66088738
134361