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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_66030750_66032639_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
66030750 - 66032639
Intron Length:
1890

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTTCT
5'SS Class:
major
3'SS Sequence:
TTTTTCTGCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
ACTTATATAACC
Flanking Amino Acid:
NSSIDKEDNQQNRILPFRDD
Intron Amino Acid Position:
280

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1.2
73.5
38.1
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
84.6
0.78
0.8
84.7
30.2
Minor 5ss
37.8
-1.4
3
51.1
45.4
Minor BPS
54.1
0.11
1.8
66.63
38.8

Associated Gene:

Gene:
ARPP21
Ensembl Gene ID:
ENSAPLG00000004808
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024541
65954378 - 66077058
122681
ENSAPLT00000004992
65954378 - 66088738
134361
ENSAPLT00000034004
65954285 - 66099776
145492