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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_66051257_66052137_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
66051257 - 66052137
Intron Length:
881

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTACTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAA
U12 Branch Point Sequence:
TTTCTTTTTACT
Flanking Amino Acid:
QEIIDFISDNNNHYKKFPQM
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.8
33.6
Major BPS
79
0.72
1
80.3
31.7
Major PPT
81.8
0.72
0.8
78
35.2
Minor 5ss
36.8
-1.5
2.7
42.7
38.3
Minor BPS
66.3
0.59
1.6
84.95
35.1

Associated Gene:

Gene:
ARPP21
Ensembl Gene ID:
ENSAPLG00000004808
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024541
65954378 - 66077058
122681
ENSAPLT00000019548
65954285 - 66099776
145492
ENSAPLT00000004992
65954378 - 66088738
134361
ENSAPLT00000041803
65954378 - 66088738
134361
ENSAPLT00000034004
65954285 - 66099776
145492