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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_66052198_66053461_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
66052198 - 66053461
Intron Length:
1264

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTGACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTCTTTTTGACA
Flanking Amino Acid:
FLINTLKNNPRDRMILLKME
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.94
0.9
90.9
28.7
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
85
0.79
0.9
83.2
32
Minor 5ss
40.3
-1.1
3.2
59.2
45.4
Minor BPS
72.3
0.7
1.1
77.18
33.8

Associated Gene:

Gene:
ARPP21
Ensembl Gene ID:
ENSAPLG00000004808
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034004
65954285 - 66099776
145492
ENSAPLT00000024541
65954378 - 66077058
122681
ENSAPLT00000019548
65954285 - 66099776
145492
ENSAPLT00000004992
65954378 - 66088738
134361
ENSAPLT00000041803
65954378 - 66088738
134361