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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_66054873_66058981_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
66054873 - 66058981
Intron Length:
4109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATTTA
5'SS Class:
major
3'SS Sequence:
TTCCTCCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GAATTAT
U12 Branch Point Sequence:
TGGCCATGAATT
Flanking Amino Acid:
PGAESLHDNQESIQLQLSSF
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
77.6
33.4
Major BPS
59.2
0.23
1.3
52
43.5
Major PPT
74.6
0.55
0.8
70.1
29.4
Minor 5ss
42.1
-0.9
3.2
58.2
46.4
Minor BPS
50.6
0.1
1.7
68.84
41.6

Associated Gene:

Gene:
ARPP21
Ensembl Gene ID:
ENSAPLG00000004808
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021947
65954378 - 66062834
108457
ENSAPLT00000019548
65954285 - 66099776
145492
ENSAPLT00000041803
65954378 - 66088738
134361
ENSAPLT00000004992
65954378 - 66088738
134361
ENSAPLT00000034004
65954285 - 66099776
145492
ENSAPLT00000024541
65954378 - 66077058
122681