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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_66059072_66059922_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
66059072 - 66059922
Intron Length:
851

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGGTC
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTTATGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTCTCTTTTATG
Flanking Amino Acid:
NQNQQKKRSKSGAKGKLVRS
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
73.2
36.2
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
84
0.77
0.8
80.4
30.5
Minor 5ss
33.8
-1.8
3.7
49.8
46.8
Minor BPS
61.5
0.22
1.7
66.67
41.7

Associated Gene:

Gene:
ARPP21
Ensembl Gene ID:
ENSAPLG00000004808
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024541
65954378 - 66077058
122681
ENSAPLT00000021947
65954378 - 66062834
108457
ENSAPLT00000041803
65954378 - 66088738
134361
ENSAPLT00000019548
65954285 - 66099776
145492
ENSAPLT00000034004
65954285 - 66099776
145492
ENSAPLT00000004992
65954378 - 66088738
134361