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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_66060981_66062665_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
66060981 - 66062665
Intron Length:
1685

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGGT
5'SS Class:
strong_major
3'SS Sequence:
CTTGACCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
GTATCTTGACCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
78.6
35.9
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
78.1
0.63
0.9
73.7
36.6
Minor 5ss
33.8
-1.8
3.4
49.7
46.6
Minor BPS
56.4
0.28
1.8
74.56
41.9

Associated Gene:

Gene:
ARPP21
Ensembl Gene ID:
ENSAPLG00000004808
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034004
65954285 - 66099776
145492
ENSAPLT00000024541
65954378 - 66077058
122681
ENSAPLT00000019548
65954285 - 66099776
145492
ENSAPLT00000004992
65954378 - 66088738
134361