Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_66062835_66088689_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

66062835 - 66088689

Intron Length:

25855

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACTTCTG

5'SS Class:

major

3'SS Sequence:

TCATCTTTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TACTTTTTAATT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.8

0.58

1.1

65.7

45.6

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

84.3

0.77

0.8

76.6

37.2

Minor 5ss

36.8

-1.5

3.2

50.2

Minor BPS

72.9

0.8

1.1

36.6

Associated Gene:

Gene:

ARPP21

Ensembl Gene ID:

ENSAPLG00000004808

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041803

65954378 - 66088738

134361

ENSAPLT00000004992

65954378 - 66088738

134361