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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_66168436_66171530_R

Intron Information:

Intron Rank:
152150
Intron Class:
major
Intron Phase:
Intron Coordinates:
66168436 - 66171530
Intron Length:
3095

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTGAC
U12 Branch Point Sequence:
TGGACTGTGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
82.5
29.7
Major BPS
59
0.22
1.2
52.4
43.3
Major PPT
92.4
0.95
0.6
85.4
29.3
Minor 5ss
35.3
-1.7
3.1
46.4
43
Minor BPS
48.5
-0
2.1
68.16
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029448
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020328
66167912 - 66179721
11810