Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_66213339_66248587_R

Intron Information:

Intron Rank:

143299

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

66213339 - 66248587

Intron Length:

35249

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATCATTT

5'SS Class:

weak_major

3'SS Sequence:

TTCTCTTTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TACTAAT

U12 Branch Point Sequence:

AAATTACTAATG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.6

0.53

1.2

74.2

37.1

Major BPS

86.7

0.91

0.7

84.2

21.8

Major PPT

90.9

0.92

0.6

84.1

30.9

Minor 5ss

69.3

0.65

2.3

82.5

37.1

Minor BPS

45.4

-0.4

1.9

49.79

37.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024414

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040141

66212112 - 66256393

44282