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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_66248690_66256257_R

Intron Information:

Intron Rank:
143300
Intron Class:
major
Intron Phase:
Intron Coordinates:
66248690 - 66256257
Intron Length:
7568

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGAATG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TCTTTCTGATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.8
80.6
33.8
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
84.3
0.77
0.8
81.7
34.6
Minor 5ss
31.6
-2.1
3
39.4
46.1
Minor BPS
57.7
0.32
1.7
75.98
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024414
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040141
66212112 - 66256393
44282