About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_662564_671489_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
662564 - 671489
Intron Length:
8926

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGAAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTTAA
U12 Branch Point Sequence:
TTCTCTTTCCCA
Flanking Amino Acid:
SRAAVAQLIEATTEPPKKKP
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
82.1
31
Major BPS
60.9
0.27
1
51.6
35
Major PPT
86.4
0.82
0.7
80
32
Minor 5ss
32.6
-2
3.1
42.1
45
Minor BPS
43.8
-0.4
3.6
70.26
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022628
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037226
662465 - 692721
30257