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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_66279585_66373143_R

Intron Information:

Intron Rank:
132818
Intron Class:
major
Intron Phase:
Intron Coordinates:
66279585 - 66373143
Intron Length:
93559

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAATC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAA
U12 Branch Point Sequence:
GTCTCCTGAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
80.7
31.7
Major BPS
70.1
0.5
1.1
69.9
35.3
Major PPT
87.5
0.84
0.6
81.2
30.9
Minor 5ss
44.1
-0.6
2.8
60.5
44.2
Minor BPS
64.5
0.32
1.5
65.07
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018681
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041512
66279200 - 66426106
146907
ENSAPLT00000036983
66279200 - 66373295
94096