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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_66279585_66387325_R

Intron Information:

Intron Rank:
132814
Intron Class:
major
Intron Phase:
Intron Coordinates:
66279585 - 66387325
Intron Length:
107741

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCCTC
5'SS Class:
major
3'SS Sequence:
TCTTTTCTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAA
U12 Branch Point Sequence:
GTCTCCTGAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
69
42.1
Major BPS
70.1
0.5
1.1
69.9
35.3
Major PPT
87.5
0.84
0.6
81.2
30.9
Minor 5ss
42.5
-0.8
3.1
59.7
44.9
Minor BPS
64.5
0.32
1.5
65.07
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018681
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022780
66279200 - 66387553
108354