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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_66279585_66442872_R

Intron Information:

Intron Rank:
132811
Intron Class:
major
Intron Phase:
Intron Coordinates:
66279585 - 66442872
Intron Length:
163288

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGCCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAA
U12 Branch Point Sequence:
GTCTCCTGAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
68.7
41.8
Major BPS
70.1
0.5
1.1
69.9
35.3
Major PPT
87.5
0.84
0.6
81.2
30.9
Minor 5ss
39.5
-1.2
3.3
57
47.3
Minor BPS
64.5
0.32
1.5
65.07
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018681
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018624
66279457 - 66443413
163957