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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_66373212_66425967_R

Intron Information:

Intron Rank:
132820
Intron Class:
major
Intron Phase:
Intron Coordinates:
66373212 - 66425967
Intron Length:
52756

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTAGC
5'SS Class:
strong_major
3'SS Sequence:
CTCTTATCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTATTCTGAAGC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
77.9
36.9
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
77.3
0.61
0.8
69.4
35.8
Minor 5ss
42.2
-0.9
2.5
54.4
42.8
Minor BPS
60.1
0.3
1.8
71.78
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018681
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041512
66279200 - 66426106
146907