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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6642910_6644885_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6642910 - 6644885
Intron Length:
1976

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGTACA
5'SS Class:
major
3'SS Sequence:
TTTCTGTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAATAT
U12 Branch Point Sequence:
TAAATATTACGT
Flanking Amino Acid:
HREVPDTRDAKCREKSYPSD
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
76.1
32.7
Major BPS
59.7
0.24
1.1
55.7
39.9
Major PPT
89.1
0.88
0.7
84.2
30.7
Minor 5ss
43.8
-0.7
2.4
52.2
38.6
Minor BPS
43.1
-0.4
2
59.58
43.3

Associated Gene:

Gene:
GALNT11
Ensembl Gene ID:
ENSAPLG00000003570
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003640
6638421 - 6666758
28338