About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6651426_6653993_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6651426 - 6653993
Intron Length:
2568

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGGCTC
5'SS Class:
major
3'SS Sequence:
ACTTCCATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTAAA
U12 Branch Point Sequence:
TTTTGTCTAAAA
Flanking Amino Acid:
EGPEGATAPIKSPTMAGGLF
Intron Amino Acid Position:
321

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
70.6
39.9
Major BPS
67.6
0.44
1.2
69.9
35.3
Major PPT
74.3
0.55
0.8
71.2
33.7
Minor 5ss
37
-1.5
3.5
51.2
39.7
Minor BPS
51.2
0.03
2.1
73.18
38.6

Associated Gene:

Gene:
GALNT11
Ensembl Gene ID:
ENSAPLG00000003570
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003640
6638421 - 6666758
28338