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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6655346_6657147_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6655346 - 6657147
Intron Length:
1802

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTAAATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
TTTCTCTTAAAT
Flanking Amino Acid:
LAHVWMDEYKEQYFALRPEL
Intron Amino Acid Position:
412

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
87.2
27
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
72.6
0.51
1
66.3
37.7
Minor 5ss
36.1
-1.6
3
50.2
45.8
Minor BPS
77.3
0.93
1.3
90.72
32

Associated Gene:

Gene:
GALNT11
Ensembl Gene ID:
ENSAPLG00000003570
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003640
6638421 - 6666758
28338