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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6657367_6659898_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6657367 - 6659898
Intron Length:
2532

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAC
U12 Branch Point Sequence:
TGTTGTTTACTC
Flanking Amino Acid:
KRPKIIQRGRLYHLQTNKCL
Intron Amino Acid Position:
485

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
73.9
32.9
Major BPS
71.4
0.53
1.1
63.4
44
Major PPT
88.1
0.86
0.6
84.7
22.9
Minor 5ss
36.8
-1.5
3
39
46.2
Minor BPS
51
0.01
2
66.24
40.3

Associated Gene:

Gene:
GALNT11
Ensembl Gene ID:
ENSAPLG00000003570
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003640
6638421 - 6666758
28338