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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6660004_6665622_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6660004 - 6665622
Intron Length:
5619

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGACAT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCCTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATAAA
U12 Branch Point Sequence:
TGTGATAAAAGT
Flanking Amino Acid:
RECDYNDQNQVWVYNEDHEL
Intron Amino Acid Position:
520

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
73.4
37.3
Major BPS
63.5
0.33
1.2
64.3
39.6
Major PPT
82.8
0.74
0.7
80.6
24.6
Minor 5ss
39.7
-1.2
3.1
56
48.1
Minor BPS
38.8
-0.7
2.2
58
44.9

Associated Gene:

Gene:
GALNT11
Ensembl Gene ID:
ENSAPLG00000003570
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003640
6638421 - 6666758
28338