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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_66706382_66707130_R

Intron Information:

Intron Rank:
145811
Intron Class:
major
Intron Phase:
Intron Coordinates:
66706382 - 66707130
Intron Length:
749

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAAGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCCCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATAAA
U12 Branch Point Sequence:
GGATGTGTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
68.1
42.8
Major BPS
63.5
0.33
1.2
64.3
39.6
Major PPT
80.2
0.68
0.7
77.6
24.3
Minor 5ss
39
-1.2
2.8
49
46.8
Minor BPS
40.5
-0.6
2.4
57.87
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025837
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024120
66705838 - 66708234
2397