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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_66714766_66717143_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
66714766 - 66717143
Intron Length:
2378

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTTTAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
CTGTTTTTAATA
Flanking Amino Acid:
ARKTERDELLKDLQQSIARE
Intron Amino Acid Position:
675

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
84.4
26.9
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
75.9
0.58
0.9
73.3
35.9
Minor 5ss
45.6
-0.5
3.1
65.7
39.5
Minor BPS
68.5
0.58
1.2
69.78
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011790
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043314
66713106 - 66746343
33238
ENSAPLT00000037835
66712618 - 66746343
33726
ENSAPLT00000012376
66713106 - 66756859
43754