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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_66717239_66718134_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
66717239 - 66718134
Intron Length:
896

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTACTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TTTTTCTTTACT
Flanking Amino Acid:
LVANLKEGTKFYNELTEILL
Intron Amino Acid Position:
644

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
74.3
31.9
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
82.7
0.74
0.8
78.5
34.7
Minor 5ss
35.4
-1.7
3.3
46.2
49.1
Minor BPS
79.9
1.02
1.5
95.83
29.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011790
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043314
66713106 - 66746343
33238
ENSAPLT00000037835
66712618 - 66746343
33726
ENSAPLT00000012376
66713106 - 66756859
43754